Machine learning surrogate models of many-body dispersion interactions in polymer melts
- URL: http://arxiv.org/abs/2503.15149v1
- Date: Wed, 19 Mar 2025 12:15:35 GMT
- Title: Machine learning surrogate models of many-body dispersion interactions in polymer melts
- Authors: Zhaoxiang Shen, Raúl I. Sosa, Jakub Lengiewicz, Alexandre Tkatchenko, Stéphane P. A. Bordas,
- Abstract summary: We introduce a machine learning surrogate model specifically designed to predict MBD forces in polymer melts.<n>Our model is based on a trimmed SchNet architecture that selectively retains the most relevant atomic connections.<n>Characterized by high computational efficiency, our surrogate model enables practical incorporation of MBD effects into large-scale molecular simulations.
- Score: 40.83978401377059
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Accurate prediction of many-body dispersion (MBD) interactions is essential for understanding the van der Waals forces that govern the behavior of many complex molecular systems. However, the high computational cost of MBD calculations limits their direct application in large-scale simulations. In this work, we introduce a machine learning surrogate model specifically designed to predict MBD forces in polymer melts, a system that demands accurate MBD description and offers structural advantages for machine learning approaches. Our model is based on a trimmed SchNet architecture that selectively retains the most relevant atomic connections and incorporates trainable radial basis functions for geometric encoding. We validate our surrogate model on datasets from polyethylene, polypropylene, and polyvinyl chloride melts, demonstrating high predictive accuracy and robust generalization across diverse polymer systems. In addition, the model captures key physical features, such as the characteristic decay behavior of MBD interactions, providing valuable insights for optimizing cutoff strategies. Characterized by high computational efficiency, our surrogate model enables practical incorporation of MBD effects into large-scale molecular simulations.
Related papers
- POINT$^{2}$: A Polymer Informatics Training and Testing Database [15.45788515943579]
POINT$2$ (POlymer INformatics Training and Testing) is a benchmark database and protocol designed to address critical challenges in polymer informatics.
We develop an ensemble of ML models, including Quantile Random Forests, Multilayer Perceptrons with dropout, Graph Neural Networks, and pretrained large language models.
These models are coupled with diverse polymer representations such as Morgan, MACCS, RDKit, Topological, Atom Pair fingerprints, and graph-based descriptors.
arXiv Detail & Related papers (2025-03-30T15:46:01Z) - Multi-task learning for molecular electronic structure approaching coupled-cluster accuracy [9.81014501502049]
We develop a unified machine learning method for electronic structures of organic molecules using the gold-standard CCSD(T) calculations as training data.
Tested on hydrocarbon molecules, our model outperforms DFT with the widely-used hybrid and double hybrid functionals in computational costs and prediction accuracy of various quantum chemical properties.
arXiv Detail & Related papers (2024-05-09T19:51:27Z) - Quantum-informed simulations for mechanics of materials: DFTB+MBD framework [40.83978401377059]
We study how quantum effects can modify the mechanical properties of systems relevant to materials engineering.
We provide an open-source repository containing all codes, datasets, and examples presented in this work.
arXiv Detail & Related papers (2024-04-05T16:59:01Z) - A Multi-Grained Symmetric Differential Equation Model for Learning Protein-Ligand Binding Dynamics [73.35846234413611]
In drug discovery, molecular dynamics (MD) simulation provides a powerful tool for predicting binding affinities, estimating transport properties, and exploring pocket sites.
We propose NeuralMD, the first machine learning (ML) surrogate that can facilitate numerical MD and provide accurate simulations in protein-ligand binding dynamics.
We demonstrate the efficiency and effectiveness of NeuralMD, achieving over 1K$times$ speedup compared to standard numerical MD simulations.
arXiv Detail & Related papers (2024-01-26T09:35:17Z) - Electronic excited states from physically-constrained machine learning [0.0]
We present an integrated modeling approach, in which a symmetry-adapted ML model of an effective Hamiltonian is trained to reproduce electronic excitations from a quantum-mechanical calculation.
The resulting model can make predictions for molecules that are much larger and more complex than those that it is trained on.
arXiv Detail & Related papers (2023-11-01T20:49:59Z) - Accurate Machine Learned Quantum-Mechanical Force Fields for
Biomolecular Simulations [51.68332623405432]
Molecular dynamics (MD) simulations allow atomistic insights into chemical and biological processes.
Recently, machine learned force fields (MLFFs) emerged as an alternative means to execute MD simulations.
This work proposes a general approach to constructing accurate MLFFs for large-scale molecular simulations.
arXiv Detail & Related papers (2022-05-17T13:08:28Z) - Prediction of liquid fuel properties using machine learning models with
Gaussian processes and probabilistic conditional generative learning [56.67751936864119]
The present work aims to construct cheap-to-compute machine learning (ML) models to act as closure equations for predicting the physical properties of alternative fuels.
Those models can be trained using the database from MD simulations and/or experimental measurements in a data-fusion-fidelity approach.
The results show that ML models can predict accurately the fuel properties of a wide range of pressure and temperature conditions.
arXiv Detail & Related papers (2021-10-18T14:43:50Z) - Efficient Model-Based Multi-Agent Mean-Field Reinforcement Learning [89.31889875864599]
We propose an efficient model-based reinforcement learning algorithm for learning in multi-agent systems.
Our main theoretical contributions are the first general regret bounds for model-based reinforcement learning for MFC.
We provide a practical parametrization of the core optimization problem.
arXiv Detail & Related papers (2021-07-08T18:01:02Z) - GeoMol: Torsional Geometric Generation of Molecular 3D Conformer
Ensembles [60.12186997181117]
Prediction of a molecule's 3D conformer ensemble from the molecular graph holds a key role in areas of cheminformatics and drug discovery.
Existing generative models have several drawbacks including lack of modeling important molecular geometry elements.
We propose GeoMol, an end-to-end, non-autoregressive and SE(3)-invariant machine learning approach to generate 3D conformers.
arXiv Detail & Related papers (2021-06-08T14:17:59Z) - BIGDML: Towards Exact Machine Learning Force Fields for Materials [55.944221055171276]
Machine-learning force fields (MLFF) should be accurate, computationally and data efficient, and applicable to molecules, materials, and interfaces thereof.
Here, we introduce the Bravais-Inspired Gradient-Domain Machine Learning approach and demonstrate its ability to construct reliable force fields using a training set with just 10-200 atoms.
arXiv Detail & Related papers (2021-06-08T10:14:57Z) - A Universal Framework for Featurization of Atomistic Systems [0.0]
Reactive force fields based on physics or machine learning can be used to bridge the gap in time and length scales.
We introduce the Gaussian multi-pole (GMP) featurization scheme that utilizes physically-relevant multi-pole expansions of the electron density around atoms.
We demonstrate that GMP-based models can achieve chemical accuracy for the QM9 dataset, and their accuracy remains reasonable even when extrapolating to new elements.
arXiv Detail & Related papers (2021-02-04T03:11:00Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.