ISLES'24 -- A Real-World Longitudinal Multimodal Stroke Dataset
- URL: http://arxiv.org/abs/2408.11142v2
- Date: Sun, 06 Jul 2025 08:42:40 GMT
- Title: ISLES'24 -- A Real-World Longitudinal Multimodal Stroke Dataset
- Authors: Evamaria Olga Riedel, Ezequiel de la Rosa, The Anh Baran, Moritz Hernandez Petzsche, Hakim Baazaoui, Kaiyuan Yang, Fabio Antonio Musio, Houjing Huang, David Robben, Joaquin Oscar Seia, Roland Wiest, Mauricio Reyes, Ruisheng Su, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Bjoern Menze, Daniel Rueckert, Benedikt Wiestler, Susanne Wegener, Jan Stefan Kirschke,
- Abstract summary: Stroke remains a leading cause of global morbidity and mortality, imposing a heavy socioeconomic burden.<n> Developing machine learning algorithms that can create accurate models of brain function from stroke images requires large, diverse, and well annotated public datasets.<n>This multicenter dataset consists of 245 cases and is a solid basis for developing powerful machine-learning algorithms to facilitate clinical decision-making.
- Score: 9.501255615225428
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: Stroke remains a leading cause of global morbidity and mortality, imposing a heavy socioeconomic burden. Advances in endovascular reperfusion therapy and CT and MR imaging for treatment guidance have significantly improved patient outcomes. Developing machine learning algorithms that can create accurate models of brain function from stroke images for tasks like lesion identification and tissue survival prediction requires large, diverse, and well annotated public datasets. While several high-quality image datasets in stroke exist, they include only single time point data. Data over different time points are essential to accurately identify lesions and predict prognosis. Here, we provide comprehensive longitudinal stroke data, including (sub-)acute CT imaging with angiography and perfusion, follow-up MRI after 2-9 days, and acute and longitudinal clinical data up to a three-month outcome. The dataset also includes vessel occlusion masks from acute CT angiography and delineated infarction masks in follow-up MRI. This multicenter dataset consists of 245 cases and is a solid basis for developing powerful machine-learning algorithms to facilitate clinical decision-making.
Related papers
- Foundation Model for Whole-Heart Segmentation: Leveraging Student-Teacher Learning in Multi-Modal Medical Imaging [0.510750648708198]
Whole-heart segmentation from CT and MRI scans is crucial for cardiovascular disease analysis.<n>Existing methods struggle with modality-specific biases and the need for extensive labeled datasets.<n>We propose a foundation model for whole-heart segmentation using a self-supervised learning framework based on a student-teacher architecture.
arXiv Detail & Related papers (2025-03-24T14:47:54Z) - ContextMRI: Enhancing Compressed Sensing MRI through Metadata Conditioning [51.26601171361753]
We propose ContextMRI, a text-conditioned diffusion model for MRI that integrates granular metadata into the reconstruction process.
We show that increasing the fidelity of metadata, ranging from slice location and contrast to patient age, sex, and pathology, systematically boosts reconstruction performance.
arXiv Detail & Related papers (2025-01-08T05:15:43Z) - SMILE-UHURA Challenge -- Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms [60.35639972035727]
The lack of publicly available annotated datasets has impeded the development of robust, machine learning-driven segmentation algorithms.
The SMILE-UHURA challenge addresses the gap in publicly available annotated datasets by providing an annotated dataset of Time-of-Flight angiography acquired with 7T MRI.
Dice scores reached up to 0.838 $pm$ 0.066 and 0.716 $pm$ 0.125 on the respective datasets, with an average performance of up to 0.804 $pm$ 0.15.
arXiv Detail & Related papers (2024-11-14T17:06:00Z) - FedCVD: The First Real-World Federated Learning Benchmark on Cardiovascular Disease Data [52.55123685248105]
Cardiovascular diseases (CVDs) are currently the leading cause of death worldwide, highlighting the critical need for early diagnosis and treatment.
Machine learning (ML) methods can help diagnose CVDs early, but their performance relies on access to substantial data with high quality.
This paper presents the first real-world FL benchmark for cardiovascular disease detection, named FedCVD.
arXiv Detail & Related papers (2024-10-28T02:24:01Z) - ISLES'24: Improving final infarct prediction in ischemic stroke using multimodal imaging and clinical data [3.2816454618159008]
This work presents the ISLES'24 challenge, which addresses final post-treatment stroke infarct prediction from pre-interventional acute stroke imaging and clinical data.
The contributions of this work are two-fold: first, we introduce a standardized benchmarking of final stroke infarct segmentation algorithms through the ISLES'24 challenge; second, we provide insights into infarct segmentation using multimodal imaging and clinical data strategies.
arXiv Detail & Related papers (2024-08-20T16:01:05Z) - Multimodal Deformable Image Registration for Long-COVID Analysis Based on Progressive Alignment and Multi-perspective Loss [0.0]
Long COVID is characterized by persistent symptoms, particularly pulmonary impairment.
Integrating functional data from XeMRI with structural data from CT is crucial for comprehensive analysis and effective treatment strategies.
We propose an end-to-end multimodal deformable image registration method that achieves superior performance for aligning long-COVID lung CT and proton density MRI data.
arXiv Detail & Related papers (2024-06-21T14:19:18Z) - Predicting recovery following stroke: deep learning, multimodal data and
feature selection using explainable AI [3.797471910783104]
Major challenges include the very high dimensionality of neuroimaging data and the relatively small size of the datasets available for learning.
We introduce a novel approach of training a convolutional neural network (CNN) on images that combine regions-of-interest extracted from MRIs.
We conclude by proposing how the current models could be improved to achieve even higher levels of accuracy using images from hospital scanners.
arXiv Detail & Related papers (2023-10-29T22:31:20Z) - APIS: A paired CT-MRI dataset for ischemic stroke segmentation challenge [0.0]
APIS is the first paired public dataset with NCCT and ADC studies of acute ischemic stroke patients.
It was presented as a challenge at the 20th IEEE International Symposium on Biomedical Imaging 2023.
Despite all the teams employing specialized deep learning tools, the results suggest that the ischemic stroke segmentation task from NCCT remains challenging.
arXiv Detail & Related papers (2023-09-26T20:16:07Z) - CMRxRecon: An open cardiac MRI dataset for the competition of
accelerated image reconstruction [62.61209705638161]
There has been growing interest in deep learning-based CMR imaging algorithms.
Deep learning methods require large training datasets.
This dataset includes multi-contrast, multi-view, multi-slice and multi-coil CMR imaging data from 300 subjects.
arXiv Detail & Related papers (2023-09-19T15:14:42Z) - Revisiting Computer-Aided Tuberculosis Diagnosis [56.80999479735375]
Tuberculosis (TB) is a major global health threat, causing millions of deaths annually.
Computer-aided tuberculosis diagnosis (CTD) using deep learning has shown promise, but progress is hindered by limited training data.
We establish a large-scale dataset, namely the Tuberculosis X-ray (TBX11K) dataset, which contains 11,200 chest X-ray (CXR) images with corresponding bounding box annotations for TB areas.
This dataset enables the training of sophisticated detectors for high-quality CTD.
arXiv Detail & Related papers (2023-07-06T08:27:48Z) - ISLES 2022: A multi-center magnetic resonance imaging stroke lesion
segmentation dataset [36.278933802685316]
This dataset comprises 400 multi-vendor MRI cases with high variability in stroke lesion size, quantity and location.
It is split into a training dataset of n=250 and a test dataset of n=150.
The test dataset will be used for model validation only and will not be released to the public.
arXiv Detail & Related papers (2022-06-14T08:54:40Z) - Weakly-supervised Biomechanically-constrained CT/MRI Registration of the
Spine [72.85011943179894]
We propose a weakly-supervised deep learning framework that preserves the rigidity and the volume of each vertebra while maximizing the accuracy of the registration.
We specifically design these losses to depend only on the CT label maps since automatic vertebra segmentation in CT gives more accurate results contrary to MRI.
Our results show that adding the anatomy-aware losses increases the plausibility of the inferred transformation while keeping the accuracy untouched.
arXiv Detail & Related papers (2022-05-16T10:59:55Z) - Multi-confound regression adversarial network for deep learning-based
diagnosis on highly heterogenous clinical data [1.2891210250935143]
We developed a novel deep learning architecture, MUCRAN, to train a deep learning model on highly heterogeneous clinical data.
We trained MUCRAN using 16,821 clinical T1 Axial brain MRIs collected from Massachusetts General Hospital before 2019.
The model showed a robust performance of over 90% accuracy on newly collected data.
arXiv Detail & Related papers (2022-05-05T18:39:09Z) - ShuffleUNet: Super resolution of diffusion-weighted MRIs using deep
learning [47.68307909984442]
Single Image Super-Resolution (SISR) is a technique aimed to obtain high-resolution (HR) details from one single low-resolution input image.
Deep learning extracts prior knowledge from big datasets and produces superior MRI images from the low-resolution counterparts.
arXiv Detail & Related papers (2021-02-25T14:52:23Z) - Fader Networks for domain adaptation on fMRI: ABIDE-II study [68.5481471934606]
We use 3D convolutional autoencoders to build the domain irrelevant latent space image representation and demonstrate this method to outperform existing approaches on ABIDE data.
arXiv Detail & Related papers (2020-10-14T16:50:50Z) - M3Lung-Sys: A Deep Learning System for Multi-Class Lung Pneumonia
Screening from CT Imaging [85.00066186644466]
We propose a Multi-task Multi-slice Deep Learning System (M3Lung-Sys) for multi-class lung pneumonia screening from CT imaging.
In addition to distinguish COVID-19 from Healthy, H1N1, and CAP cases, our M 3 Lung-Sys also be able to locate the areas of relevant lesions.
arXiv Detail & Related papers (2020-10-07T06:22:24Z) - Co-Heterogeneous and Adaptive Segmentation from Multi-Source and
Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion
Segmentation [48.504790189796836]
We present a novel segmentation strategy, co-heterogenous and adaptive segmentation (CHASe)
We propose a versatile framework that fuses appearance based semi-supervision, mask based adversarial domain adaptation, and pseudo-labeling.
CHASe can further improve pathological liver mask Dice-Sorensen coefficients by ranges of $4.2% sim 9.4%$.
arXiv Detail & Related papers (2020-05-27T06:58:39Z) - Prediction of Thrombectomy Functional Outcomes using Multimodal Data [2.358784542343728]
We propose a novel deep learning approach to directly exploit multimodal data to estimate the success of endovascular treatment.
We incorporate an attention mechanism in our architecture to model global feature inter-dependencies, both channel-wise and spatially.
arXiv Detail & Related papers (2020-05-26T21:51:58Z) - Diagnosis of Coronavirus Disease 2019 (COVID-19) with Structured Latent
Multi-View Representation Learning [48.05232274463484]
Recently, the outbreak of Coronavirus Disease 2019 (COVID-19) has spread rapidly across the world.
Due to the large number of affected patients and heavy labor for doctors, computer-aided diagnosis with machine learning algorithm is urgently needed.
In this study, we propose to conduct the diagnosis of COVID-19 with a series of features extracted from CT images.
arXiv Detail & Related papers (2020-05-06T15:19:15Z) - VerSe: A Vertebrae Labelling and Segmentation Benchmark for
Multi-detector CT Images [121.31355003451152]
Large Scale Vertebrae Challenge (VerSe) was organised in conjunction with the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) in 2019 and 2020.
We present the the results of this evaluation and further investigate the performance-variation at vertebra-level, scan-level, and at different fields-of-view.
arXiv Detail & Related papers (2020-01-24T21:09:18Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.