Generalised Label-free Artefact Cleaning for Real-time Medical Pulsatile Time Series
- URL: http://arxiv.org/abs/2504.21209v1
- Date: Tue, 29 Apr 2025 22:28:06 GMT
- Title: Generalised Label-free Artefact Cleaning for Real-time Medical Pulsatile Time Series
- Authors: Xuhang Chen, Ihsane Olakorede, Stefan Yu Bögli, Wenhao Xu, Erta Beqiri, Xuemeng Li, Chenyu Tang, Zeyu Gao, Shuo Gao, Ari Ercole, Peter Smielewski,
- Abstract summary: Artefacts compromise clinical decision-making in the use of medical time series.<n>We introduce a generalised label-free framework, GenClean, for real-time artefact detection.
- Score: 3.8195510803972454
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Artefacts compromise clinical decision-making in the use of medical time series. Pulsatile waveforms offer probabilities for accurate artefact detection, yet most approaches rely on supervised manners and overlook patient-level distribution shifts. To address these issues, we introduce a generalised label-free framework, GenClean, for real-time artefact cleaning and leverage an in-house dataset of 180,000 ten-second arterial blood pressure (ABP) samples for training. We first investigate patient-level generalisation, demonstrating robust performances under both intra- and inter-patient distribution shifts. We further validate its effectiveness through challenging cross-disease cohort experiments on the MIMIC-III database. Additionally, we extend our method to photoplethysmography (PPG), highlighting its applicability to diverse medical pulsatile signals. Finally, its integration into ICM+, a clinical research monitoring software, confirms the real-time feasibility of our framework, emphasising its practical utility in continuous physiological monitoring. This work provides a foundational step toward precision medicine in improving the reliability of high-resolution medical time series analysis
Related papers
- Finetuning and Quantization of EEG-Based Foundational BioSignal Models on ECG and PPG Data for Blood Pressure Estimation [53.2981100111204]
Photoplethysmography and electrocardiography can potentially enable continuous blood pressure (BP) monitoring.<n>Yet accurate and robust machine learning (ML) models remains challenging due to variability in data quality and patient-specific factors.<n>In this work, we investigate whether a model pre-trained on one modality can effectively be exploited to improve the accuracy of a different signal type.<n>Our approach achieves near state-of-the-art accuracy for diastolic BP and surpasses by 1.5x the accuracy of prior works for systolic BP.
arXiv Detail & Related papers (2025-02-10T13:33:12Z) - STIED: A deep learning model for the SpatioTemporal detection of focal Interictal Epileptiform Discharges with MEG [0.08030359871216612]
Magnetoencephalography (MEG) allows the non-invasive detection of interictal epileptiform discharges (IEDs)
Deep learning (DL) could revolutionize clinical MEG practice.
We developed STIED, a powerful yet supervised DL algorithm combining two convolutional neural networks with temporal (1D time-course) and spatial (2D topography) features of MEG signals.
arXiv Detail & Related papers (2024-10-30T18:41:22Z) - MedTsLLM: Leveraging LLMs for Multimodal Medical Time Series Analysis [6.30440420617113]
We introduce MedTsLLM, a general multimodal large language model (LLM) framework that integrates time series data and rich contextual information in the form of text to analyze physiological signals.
We perform three tasks with clinical relevance: semantic segmentation, boundary detection, and anomaly detection in time series.
Our model outperforms state-of-the-art baselines, including deep learning models, other LLMs, and clinical methods across multiple medical domains.
arXiv Detail & Related papers (2024-08-14T18:57:05Z) - TrialDura: Hierarchical Attention Transformer for Interpretable Clinical Trial Duration Prediction [19.084936647082632]
We propose TrialDura, a machine learning-based method that estimates the duration of clinical trials using multimodal data.
We encode them into Bio-BERT embeddings specifically tuned for biomedical contexts to provide a deeper and more relevant semantic understanding.
Our proposed model demonstrated superior performance with a mean absolute error (MAE) of 1.04 years and a root mean square error (RMSE) of 1.39 years compared to the other models.
arXiv Detail & Related papers (2024-04-20T02:12:59Z) - Collaborative learning of common latent representations in routinely collected multivariate ICU physiological signals [0.0]
Our algorithm integrates Long Short-Term Memory (LSTM) networks with collaborative filtering concepts to identify common physiological states across patients.
Tested on real-world ICU clinical data for intracranial hypertension (IH) detection in patients with brain injury, our method achieved an area under the curve (AUC) of 0.889 and average precision (AP) of 0.725.
arXiv Detail & Related papers (2024-02-27T22:10:51Z) - VAE-IF: Deep feature extraction with averaging for fully unsupervised artifact detection in routinely acquired ICU time-series [1.9665926763554147]
We propose a novel fully unsupervised approach to detect artifacts in minute-by-minute resolution ICU data without prior labeling or signal-specific knowledge.
Our approach combines a variational autoencoder (VAE) and an isolation forest (IF) into a hybrid model to learn features and identify anomalies.
We show that our unsupervised approach achieves comparable sensitivity to fully supervised methods and generalizes well to an external dataset.
arXiv Detail & Related papers (2023-12-10T18:03:40Z) - Clairvoyance: A Pipeline Toolkit for Medical Time Series [95.22483029602921]
Time-series learning is the bread and butter of data-driven *clinical decision support*
Clairvoyance proposes a unified, end-to-end, autoML-friendly pipeline that serves as a software toolkit.
Clairvoyance is the first to demonstrate viability of a comprehensive and automatable pipeline for clinical time-series ML.
arXiv Detail & Related papers (2023-10-28T12:08:03Z) - Real-time landmark detection for precise endoscopic submucosal
dissection via shape-aware relation network [51.44506007844284]
We propose a shape-aware relation network for accurate and real-time landmark detection in endoscopic submucosal dissection surgery.
We first devise an algorithm to automatically generate relation keypoint heatmaps, which intuitively represent the prior knowledge of spatial relations among landmarks.
We then develop two complementary regularization schemes to progressively incorporate the prior knowledge into the training process.
arXiv Detail & Related papers (2021-11-08T07:57:30Z) - Clinical Temporal Relation Extraction with Probabilistic Soft Logic
Regularization and Global Inference [50.029659413650194]
Existing methods either require expensive feature engineering or are incapable of modeling the global dependencies among the events.
In this paper, we propose a novel method, Clinical Temporal ReLation Exaction with Probabilistic Soft Logic Regularization and Global Inference.
arXiv Detail & Related papers (2020-12-16T08:23:03Z) - MIA-Prognosis: A Deep Learning Framework to Predict Therapy Response [58.0291320452122]
This paper aims at a unified deep learning approach to predict patient prognosis and therapy response.
We formalize the prognosis modeling as a multi-modal asynchronous time series classification task.
Our predictive model could further stratify low-risk and high-risk patients in terms of long-term survival.
arXiv Detail & Related papers (2020-10-08T15:30:17Z) - BiteNet: Bidirectional Temporal Encoder Network to Predict Medical
Outcomes [53.163089893876645]
We propose a novel self-attention mechanism that captures the contextual dependency and temporal relationships within a patient's healthcare journey.
An end-to-end bidirectional temporal encoder network (BiteNet) then learns representations of the patient's journeys.
We have evaluated the effectiveness of our methods on two supervised prediction and two unsupervised clustering tasks with a real-world EHR dataset.
arXiv Detail & Related papers (2020-09-24T00:42:36Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.