Weakly supervised deep learning model with size constraint for prostate cancer detection in multiparametric MRI and generalization to unseen domains
- URL: http://arxiv.org/abs/2411.02466v1
- Date: Mon, 04 Nov 2024 12:24:33 GMT
- Title: Weakly supervised deep learning model with size constraint for prostate cancer detection in multiparametric MRI and generalization to unseen domains
- Authors: Robin Trombetta, Olivier Rouvière, Carole Lartizien,
- Abstract summary: We show that the model achieves on-par performance with strong fully supervised baseline models.
We also observe a performance decrease for both fully supervised and weakly supervised models when tested on unseen data domains.
- Score: 0.90668179713299
- License:
- Abstract: Fully supervised deep models have shown promising performance for many medical segmentation tasks. Still, the deployment of these tools in clinics is limited by the very timeconsuming collection of manually expert-annotated data. Moreover, most of the state-ofthe-art models have been trained and validated on moderately homogeneous datasets. It is known that deep learning methods are often greatly degraded by domain or label shifts and are yet to be built in such a way as to be robust to unseen data or label distributions. In the clinical setting, this problematic is particularly relevant as the deployment institutions may have different scanners or acquisition protocols than those from which the data has been collected to train the model. In this work, we propose to address these two challenges on the detection of clinically significant prostate cancer (csPCa) from bi-parametric MRI. We evaluate the method proposed by (Kervadec et al., 2018), which introduces a size constaint loss to produce fine semantic cancer lesions segmentations from weak circle scribbles annotations. Performance of the model is based on two public (PI-CAI and Prostate158) and one private databases. First, we show that the model achieves on-par performance with strong fully supervised baseline models, both on in-distribution validation data and unseen test images. Second, we observe a performance decrease for both fully supervised and weakly supervised models when tested on unseen data domains. This confirms the crucial need for efficient domain adaptation methods if deep learning models are aimed to be deployed in a clinical environment. Finally, we show that ensemble predictions from multiple trainings increase generalization performance.
Related papers
- Mitigating annotation shift in cancer classification using single image generative models [1.1864334278373239]
This study simulates, analyses and mitigates annotation shifts in cancer classification in the breast mammography domain.
We propose a training data augmentation approach based on single-image generative models for the affected class.
Our study offers key insights into annotation shift in deep learning breast cancer classification and explores the potential of single-image generative models to overcome domain shift challenges.
arXiv Detail & Related papers (2024-05-30T07:02:50Z) - Learning Feature Inversion for Multi-class Anomaly Detection under General-purpose COCO-AD Benchmark [101.23684938489413]
Anomaly detection (AD) is often focused on detecting anomalies for industrial quality inspection and medical lesion examination.
This work first constructs a large-scale and general-purpose COCO-AD dataset by extending COCO to the AD field.
Inspired by the metrics in the segmentation field, we propose several more practical threshold-dependent AD-specific metrics.
arXiv Detail & Related papers (2024-04-16T17:38:26Z) - DGM-DR: Domain Generalization with Mutual Information Regularized
Diabetic Retinopathy Classification [40.35834579068518]
Domain shift between training and testing data presents a significant challenge for training general deep learning models.
We introduce a DG method that re-establishes the model objective function as a pretrained model to the medical imaging field.
Our proposed method consistently outperforms the previous state-of-the-art by a margin of 5.25% in average accuracy and a lower standard deviation.
arXiv Detail & Related papers (2023-09-18T11:17:13Z) - UDAMA: Unsupervised Domain Adaptation through Multi-discriminator
Adversarial Training with Noisy Labels Improves Cardio-fitness Prediction [16.26599832125242]
We introduce UDAMA, a method with two key components: Unsupervised Domain Adaptation and Multidiscriminator Adversarial Training.
In particular, we showcase the practical potential of UDAMA by applying it to Cardio-respiratory fitness (CRF) prediction.
Our results show promising performance by alleviating distribution shifts in various label shift settings.
arXiv Detail & Related papers (2023-07-31T13:31:53Z) - Rethinking Semi-Supervised Medical Image Segmentation: A
Variance-Reduction Perspective [51.70661197256033]
We propose ARCO, a semi-supervised contrastive learning framework with stratified group theory for medical image segmentation.
We first propose building ARCO through the concept of variance-reduced estimation and show that certain variance-reduction techniques are particularly beneficial in pixel/voxel-level segmentation tasks.
We experimentally validate our approaches on eight benchmarks, i.e., five 2D/3D medical and three semantic segmentation datasets, with different label settings.
arXiv Detail & Related papers (2023-02-03T13:50:25Z) - Augmentation based unsupervised domain adaptation [2.304713283039168]
Deep learning models trained on small and unrepresentative data tend to outperform when deployed in data that differs from the one used for training.
Our approach takes advantage of the properties of adversarial domain adaptation and consistency training to achieve more robust adaptation.
arXiv Detail & Related papers (2022-02-23T13:06:07Z) - Many-to-One Distribution Learning and K-Nearest Neighbor Smoothing for
Thoracic Disease Identification [83.6017225363714]
deep learning has become the most powerful computer-aided diagnosis technology for improving disease identification performance.
For chest X-ray imaging, annotating large-scale data requires professional domain knowledge and is time-consuming.
In this paper, we propose many-to-one distribution learning (MODL) and K-nearest neighbor smoothing (KNNS) methods to improve a single model's disease identification performance.
arXiv Detail & Related papers (2021-02-26T02:29:30Z) - Adversarial Sample Enhanced Domain Adaptation: A Case Study on
Predictive Modeling with Electronic Health Records [57.75125067744978]
We propose a data augmentation method to facilitate domain adaptation.
adversarially generated samples are used during domain adaptation.
Results confirm the effectiveness of our method and the generality on different tasks.
arXiv Detail & Related papers (2021-01-13T03:20:20Z) - Shape-aware Meta-learning for Generalizing Prostate MRI Segmentation to
Unseen Domains [68.73614619875814]
We present a novel shape-aware meta-learning scheme to improve the model generalization in prostate MRI segmentation.
Experimental results show that our approach outperforms many state-of-the-art generalization methods consistently across all six settings of unseen domains.
arXiv Detail & Related papers (2020-07-04T07:56:02Z) - Cross-Domain Segmentation with Adversarial Loss and Covariate Shift for
Biomedical Imaging [2.1204495827342438]
This manuscript aims to implement a novel model that can learn robust representations from cross-domain data by encapsulating distinct and shared patterns from different modalities.
The tests on CT and MRI liver data acquired in routine clinical trials show that the proposed model outperforms all other baseline with a large margin.
arXiv Detail & Related papers (2020-06-08T07:35:55Z) - Self-Training with Improved Regularization for Sample-Efficient Chest
X-Ray Classification [80.00316465793702]
We present a deep learning framework that enables robust modeling in challenging scenarios.
Our results show that using 85% lesser labeled data, we can build predictive models that match the performance of classifiers trained in a large-scale data setting.
arXiv Detail & Related papers (2020-05-03T02:36:00Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.