Intra-Domain Task-Adaptive Transfer Learning to Determine Acute Ischemic Stroke Onset Time

• URL: http://arxiv.org/abs/2011.03350v1
• Date: Thu, 5 Nov 2020 18:28:54 GMT
• Title: Intra-Domain Task-Adaptive Transfer Learning to Determine Acute Ischemic Stroke Onset Time
• Authors: Haoyue Zhang, Jennifer S Polson, Kambiz Nael, Noriko Salamon, Bryan Yoo, Suzie El-Saden, Fabien Scalzo, William Speier, Corey W Arnold
• Abstract summary: Treatment of acute ischemic strokes (AIS) is largely contingent upon the time since stroke onset (TSS) Current clinical guidelines for patients with unknown TSS recommend the use of MRI to determine eligibility for thrombolysis, but radiology assessments have high inter-reader variability. We present deep learning models that leverage MRI diffusion series to classify TSS based on clinically validated thresholds.
• Score: 7.024121839235693
• License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
• Abstract: Treatment of acute ischemic strokes (AIS) is largely contingent upon the time since stroke onset (TSS). However, TSS may not be readily available in up to 25% of patients with unwitnessed AIS. Current clinical guidelines for patients with unknown TSS recommend the use of MRI to determine eligibility for thrombolysis, but radiology assessments have high inter-reader variability. In this work, we present deep learning models that leverage MRI diffusion series to classify TSS based on clinically validated thresholds. We propose an intra-domain task-adaptive transfer learning method, which involves training a model on an easier clinical task (stroke detection) and then refining the model with different binary thresholds of TSS. We apply this approach to both 2D and 3D CNN architectures with our top model achieving an ROC-AUC value of 0.74, with a sensitivity of 0.70 and a specificity of 0.81 for classifying TSS < 4.5 hours. Our pretrained models achieve better classification metrics than the models trained from scratch, and these metrics exceed those of previously published models applied to our dataset. Furthermore, our pipeline accommodates a more inclusive patient cohort than previous work, as we did not exclude imaging studies based on clinical, demographic, or image processing criteria. When applied to this broad spectrum of patients, our deep learning model achieves an overall accuracy of 75.78% when classifying TSS < 4.5 hours, carrying potential therapeutic implications for patients with unknown TSS.

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